miRBase entry: pal-mir-10007

Stem-loop pal-mir-10007


Accession
MI0032602
Description
Pteropus alecto pal-mir-10007 precursor miRNA


Sequence

AAGGGGCUUCUGUGGGAUGGAGcugaauggaggcgaggccgcaggccacccugugcuCCUCCAGCGCGAGCCCCUGCA
.((((((((.(((.(((.(((((.....(.(((.(.((((...)))).)))).))))))))).))).))))))))...

Structure
--A        C   G   U     ugaau g   c a    g 
   AGGGGCUU UGU GGA GGAGc     g agg g ggcc  
   |||||||| ||| ||| |||||     | ||| | |||| c
   UCCCCGAG GCG CCU CCucg     u ucc c ccgg  
ACG        C   A   -     ----- g   - a    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
KB030755.1: 138843-138920 [+]

Database links

Mature pal-miR-10007-5p

Accession MIMAT0040304
Description Pteropus alecto pal-miR-10007-5p mature miRNA
Sequence 1 - AAGGGGCUUCUGUGGGAUGGAG - 22
Evidence experimental
Illumina [1]

Mature pal-miR-10007-3p

Accession MIMAT0040305
Description Pteropus alecto pal-miR-10007-3p mature miRNA
Sequence 58 - CCUCCAGCGCGAGCCCCUGCA - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682