miRBase entry: pal-mir-1306

Stem-loop pal-mir-1306


Accession
MI0032641
Description
Pteropus alecto pal-mir-1306 precursor miRNA

Literature search
1 open access papers mention pal-mir-1306
(1 sentences)

Sequence

GCGCUGCCCCAUGAACAGUCUCCaccaccuccccugcaaacguccagugaugcagagguaauggACGUUGGCUCUGGUGGUGAUG
......................(((((((......((.((((((((...((......))..)))))))).))...)))))))...

Structure
GCGCUGCCCCAUGAACAGUCUC       uccccu  a        gug  gc 
                      Caccacc      gc aacgucca   au  a
                      |||||||      || ||||||||   ||   
                      GUGGUGG      CG UUGCAggu   ug  g
-------------------GUA       ---UCU  G        -aa  ga 


Annotation confidence Not enough data
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Genome context
KB030791.1: 4872165-4872249 [-]

Database links

Mature pal-miR-1306-5p

Accession MIMAT0040381
Description Pteropus alecto pal-miR-1306-5p mature miRNA
Sequence 1 - GCGCUGCCCCAUGAACAGUCUCC - 23
Evidence experimental
Illumina [1]

Mature pal-miR-1306-3p

Accession MIMAT0040382
Description Pteropus alecto pal-miR-1306-3p mature miRNA
Sequence 65 - ACGUUGGCUCUGGUGGUGAUG - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682