miRBase entry: pal-mir-377

Stem-loop pal-mir-377


Accession
MI0032658
Description
Pteropus alecto pal-mir-377 precursor miRNA

Literature search
1 open access papers mention pal-mir-377
(2 sentences)

Sequence

AGAGGUCGCCCUUGGUGAAUUCgcuuuauuuauguugaAUCACACAAAGGCAACUUUUGU
((((((.(((.(((((((.(((((.........).)))))))).))).))).))))))..

Structure
--      C   C   -    A    - uuu 
  AGAGGU GCC UUG GUGA UUCg c   a
  |||||| ||| ||| |||| |||| |   u
  UUUUCA CGG AAC CACU Aagu g   u
UG      A   A   A    -    u uau 


Annotation confidence Not enough data
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Genome context
KB031153.1: 22104473-22104532 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from pal-mir-377
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-377-5p

Accession MIMAT0040412
Description Pteropus alecto pal-miR-377-5p mature miRNA
Sequence 1 - AGAGGUCGCCCUUGGUGAAUUC - 22
Evidence experimental
Illumina [1]

Mature pal-miR-377-3p

Accession MIMAT0040413
Description Pteropus alecto pal-miR-377-3p mature miRNA
Sequence 39 - AUCACACAAAGGCAACUUUUGU - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682