miRBase entry: hpo-mir-9

Stem-loop hpo-mir-9


Accession
MI0032695
Description
Heligmosomoides polygyrus hpo-mir-9 precursor miRNA

Literature search
1 open access papers mention hpo-mir-9
(1 sentences)

Sequence

gucauugaucUCUUUGGUUAUCUAGCUGUAUGAuuuuucguacucAUAAGGCUGGACGACUAAAGGAAucaauucguc
...((((((.(((((((((.(((((((((((((....))))))......))))))).))))))))).)))))).....

Structure
--guc      c         A       ------      u 
     auugau UCUUUGGUU UCUAGCU      GUAUGA u
     |||||| ||||||||| |||||||      ||||||  
     uaacuA GGAAAUCAG AGGUCGG      caugcu u
cugcu      A         C       AAUAcu      u 


Annotation confidence Not enough data
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Genome context
HpolyGenome23022012_contig_185028: 2391-2468 [+]

Database links

Mature hpo-miR-9-5p

Accession MIMAT0040476
Description Heligmosomoides polygyrus hpo-miR-9-5p mature miRNA
Sequence 11 - UCUUUGGUUAUCUAGCUGUAUGA - 33
Evidence experimental
Illumina [1]

Mature hpo-miR-9-3p

Accession MIMAT0040477
Description Heligmosomoides polygyrus hpo-miR-9-3p mature miRNA
Sequence 46 - AUAAGGCUGGACGACUAAAGGAA - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25421927
    Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
    Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
    Nat Commun (2014) 5:5488