miRBase entry: gma-MIR10194

Stem-loop gma-MIR10194


Accession
MI0032961
Description
Glycine max gma-MIR10194 precursor miRNA


Sequence

uguuggcacaUGUUGAAGGUGUGUAUGACAAGuaucaugucauuuaagucuuugacacguuccacaaacaaaggugucaauguuucuugggaagcacugacaucuuugugaaacguguuggcgugucagacacuuaucagacacgacacuugucaugcacgccuucgacacguguuggac
..(((((((.(((((((((((((((((((((((.((.((((...(((((.(((((((((((.(((..((((((((((((.((((((....)))))).)))))))))))).....)))..))))))))))).)))))...)))).)).))))))))))))))))))))))).)))))))..

Structure
ug       a                       a  a    auu     c           -c   ---aa            a      u 
  uuggcac UGUUGAAGGUGUGUAUGACAAGu uc uguc   uaagu uuugacacguu  cac     acaaagguguca uguuuc u
  ||||||| ||||||||||||||||||||||| || ||||   ||||| |||||||||||  |||     |||||||||||| ||||||  
  gguugug acagcuuccgcacguacuguuca ag acag   auuca agacugugcgg  gug     uguuucuacagu acgaag g
ca       c                       c  c    acu     c           uu   caaag            c      g 


Annotation confidence Not enough data
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Genome context
chr17: 13116829-13117008 [+]

Database links

Mature gma-miR10194

Accession MIMAT0040961
Description Glycine max gma-miR10194 mature miRNA
Sequence 11 - UGUUGAAGGUGUGUAUGACAAG - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25465409
    An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
    "Arikit S, Xia R, Kakrana A, Huang K, Zhai J, Yan Z, Valdes-Lopez O, Prince S, Musket TA, Nguyen HT, Stacey G, Meyers BC"
    "Plant Cell (2014) 26:4584-4601