miRBase entry: egr-mir-133

Stem-loop egr-mir-133


Accession
MI0033114
Description
Echinococcus granulosus egr-mir-133 precursor miRNA

Literature search
1 open access papers mention egr-mir-133
(1 sentences)

Sequence

caagaGGCUGAUUUGUGGGGCUCAGAAaagcuguaaaugaaaacuuUUGGUCCCCAUUAACCAGCCGCcugca
..((.(((((.((.((((((.((((((.................)))))).)))))).)).)))))..))...

Structure
-ca  -a     A  U      C      aagcugu 
   ag  GGCUG UU GUGGGG UCAGAA       a
   ||  ||||| || |||||| ||||||       a
   uc  CCGAC AA UACCCC GGUUuu       a
acg  CG     C  U      U      caaaagu 


Annotation confidence Not enough data
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Genome context
APAU02000107.1: 129469-129541 [+]

Database links

Mature egr-miR-133-5p

Accession MIMAT0041195
Description Echinococcus granulosus egr-miR-133-5p mature miRNA
Sequence 6 - GGCUGAUUUGUGGGGCUCAGAA - 27
Evidence experimental
Illumina [1-2]

Mature egr-miR-133-3p

Accession MIMAT0041196
Description Echinococcus granulosus egr-miR-133-3p mature miRNA
Sequence 47 - UUGGUCCCCAUUAACCAGCCGC - 68
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25656283
    microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
    Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
    Parasit Vectors (2015) 8:83

  2. PubMed ID: 25168356
    Genome-wide sequencing of small RNAs reveals a tissue-specific loss of conserved microRNA families in Echinococcus granulosus
    Bai Y, Zhang Z, Jin L, Kang H, Zhu Y, Zhang L, Li X, Ma F, Zhao L, Shi B, Li J, McManus DP, Zhang W, Wang S
    BMC Genomics (2014) 15:736