Stem-loop sequence aga-mir-2944a-1

Accession

MI0033336 (change log)

Description

Anopheles gambiae miR-2944a-1 stem-loop

Literature search

3 open access papers mention aga-mir-2944a-1
(14 sentences)

Stem-loop

   -g    a  uu          c   gu 
5'   aagg ac  cugcugugau uga  u
     |||| ||  |||||||||| |||  a
3'   uuuc ug  gaugacacua acu  g
   aa    a  uu          u   ag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AgamP3; GCA_000005575.1): chr3R: 43008879-43008934 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from aga-mir-2944a-1

• aga-mir-286: chr3R: 43009395-43009490 [-]
• aga-mir-2944b: chr3R: 43009067-43009127 [-]
• aga-mir-2944a-1: chr3R: 43008879-43008934 [-]
• aga-mir-309: chr3R: 43008711-43008784 [-]

Database links

• miRBase Tracker:MI0033336

Mature sequence aga-miR-2944a-5p

• Accession: MIMAT0041503
• Sequence: 1 - gaaggaacuucugcugugaucu - 22
• Evidence: experimental; Illumina [1]

Mature sequence aga-miR-2944a-3p

• Accession: MIMAT0041504
• Sequence: 35 - uaucacaguaguuguacuuuaa - 56
• Evidence: experimental; Illumina [1]

References

1. PMID:25766668 "The germline of the malaria mosquito produces abundant miRNAs, endo-siRNAs, piRNAs and 29-nt small RNAs" Castellano L, Rizzi E, Krell J, Di Cristina M, Galizi R, Mori A, Tam J, De Bellis G, Stebbing J, Crisanti A, Nolan T BMC Genomics. 16:100(2015).