miRBase entry: ssc-mir-200b

Stem-loop ssc-mir-200b


Accession
MI0033407
Description
Sus scrofa ssc-mir-200b precursor miRNA

Literature search
7 open access papers mention ssc-mir-200b
(35 sentences)

Sequence

12 reads, 11 reads per million, 3 experiments
ccgccaucuuacugggcagcauuggauggugucuggucucUAAUACUGCCUGGUAAUGAUGACgg
(((.(((((((((((((((.((((((.((.......)))))))).))))))))))).)))).)))

Structure
   c    -           c      u  ug 
ccg cauc uuacugggcag auugga gg  u
||| |||| ||||||||||| |||||| ||  c
ggC GUAG AAUGGUCCGUC UAAUcu cu  u
   A    U           A      -  gg 


Annotation confidence Not enough data
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Genome context
chr6: 58064306-58064370 [+]

Database links

Mature ssc-miR-200b

Accession MIMAT0041606
Description Sus scrofa ssc-miR-200b mature miRNA
Sequence 41 - UAAUACUGCCUGGUAAUGAUGAC - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25230983
    The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
    "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
    "J Appl Genet (2015) 56:239-252