Stem-loop sequence ssc-mir-660

Accession

MI0033413 (change log)

Description

Sus scrofa miR-660 stem-loop

Literature search

2 open access papers mention ssc-mir-660
(3 sentences)

Stem-loop

       -cauac    u      c    u   gaau 
5' cucc      ccau gcauau ggag ugu    u
   ||||      |||| |||||| |||| |||    c
3' gagg      ggua cgugua ccuc acg    u
       acauuu    -      u    c   aaac 

Deep sequencing

1679 reads, 267 reads per million, 15 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sscrofa10.2; GCA_000003025.4): chrX: 48640821-48640889 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ssc-mir-660

• ssc-mir-532: chrX: 48632025-48632104 [+]
• ssc-mir-500: chrX: 48637994-48638073 [+]
• ssc-mir-362: chrX: 48638466-48638544 [+]
• ssc-mir-660: chrX: 48640821-48640889 [+]

Database links

• miRBase Tracker:MI0033413

Mature sequence ssc-miR-660

• Accession: MIMAT0041612
• Sequence: 7 - uacccauugcauaucggaguug - 28
• Deep sequencing: 1678 reads, 15 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:25230983 "The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing" Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M J Appl Genet. 56:239-252(2015).