Stem-loop ssc-mir-660

Accession

MI0033413

Description

Sus scrofa ssc-mir-660 precursor miRNA

Literature search

2 open access papers mention ssc-mir-660
(4 sentences)

Sequence

59 reads, 20 reads per million, 10 experiments

cucccaUACCCAUUGCAUAUCGGAGUUGugaauucucaaagcaccuccuaugugcaugguuuacaggag
((((.....((((.((((((.((((.(((...........))).)))).))))))))))......))))

Structure

    -caUAC    U      C    U   gaau 
cucc      CCAU GCAUAU GGAG UGu    u
||||      |||| |||||| |||| |||    c
gagg      ggua cgugua ccuc acg    u
    acauuu    -      u    c   aaac 

Annotation confidence Not enough data

Genome context

chrX: 48640821-48640889 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from ssc-mir-660

Mature ssc-miR-660

• Accession: MIMAT0041612
• Description: Sus scrofa ssc-miR-660 mature miRNA
• Sequence: 7 - UACCCAUUGCAUAUCGGAGUUG - 28
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25230983
   The characteristics of the porcine (Sus scrofa) liver miRNAome with the use of next generation sequencing
   "Pawlina K, Gurgul A, Oczkowicz M, Bugno-Poniewierska M"
   "J Appl Genet (2015) 56:239-252