miRBase entry: gma-MIR10440

Stem-loop gma-MIR10440


Accession
MI0033505
Description
Glycine max gma-MIR10440 precursor miRNA


Sequence

augauuggaagguuuauguuauauaucugaaguauugucccaaugaucauuaaaguauaauggucaaauugugcucuuugguuaacaaagucuuucuuguguaagaauuuaauguuacaaggaguuguuagauaaccuuaacaaguuauuuaacacuaaacuuugacagagaaaagauuauguucaccaaagaaacaagcuugugauguuucugaucuugaacauugucuuuacccuuugaugaucauugguguuucugaucuugaacauugucuuuacccuuugaugaucaUUGGGACAAUACUUUAGAUAUauaacaaaaaucuucuaacaaucau
(((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((((......)))))))((((((((.((((.(((((((.((.(((.(((.((((.(((((....((.(((((((......))))))).))...))))).)))).))).))).)).))))))).)))).)))))))).(((....)))(((((((..((((..((((((((((.(((.....))).)))....)))))))..))))..)))))))..........)))))))))))))))))))))))))))))))))))))).))))))))...)))))))

Structure
       ---        a                                      --------------------------------------------------------------------guauaauggucaaauugugc        u    a       c  g   a   a    a     caag  g       au 
augauug   gaagguuu uguuauauaucugaaguauugucccaaugaucauuaaa                                                                                        ucuuuggu aaca agucuuu uu ugu aga uuua uguua    ga uuguuag  a
|||||||   |||||||| ||||||||||||||||||||||||||||||||||||||                                                                                        |||||||| |||| ||||||| || ||| ||| |||| |||||    || |||||||   
uacuaac   cuucuaaa acaauaUAUAGAUUUCAUAACAGGGUUacuaguaguuu                                                                                        agaaacca uugu uuagaaa ga aca uuu aaau acaau    uu aacaauu  a
       aau        a                                      cccauuucuguuacaaguucuagucuuugugguuacuaguaguuucccauuucuguuacaaguucuagucuuuguaguguucgaacaa        c    a       a  g   g   c    c     -uua  g       cc 


Annotation confidence Not enough data
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Genome context
chr18: 48514053-48514390 [+]

Database links

Mature gma-miR10440

Accession MIMAT0041713
Description Glycine max gma-miR10440 mature miRNA
Sequence 293 - UUGGGACAAUACUUUAGAUAU - 313
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25747880
    Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
    "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
    "Plant Cell (2015) 27:546-562