Stem-loop sequence egr-mir-3479b

Accession

MI0033522 (change log)

Description

Echinococcus granulosus miR-3479b stem-loop

Literature search

2 open access papers mention egr-mir-3479b
(9 sentences)

Stem-loop

   ---u       c cg c    uu     ua     cu 
5'     ggcggug g  g gcaa  ucugu  acccg  c
       ||||||| |  | ||||  |||||  |||||   
3'     ccgcuac c  c cguu  agacg  ugggu  u
   acac       c au a    --     --     uc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM52419v1; GCA_000524195.1): APAU02000015.1: 733485-733553 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0033522

Mature sequence egr-miR-3479b-5p

• Accession: MIMAT0041730
• Sequence: 1 - uggcggugcgcggcgcaauuucug - 24
• Evidence: experimental; Illumina [1]

Mature sequence egr-miR-3479b-3p

• Accession: MIMAT0041731
• Sequence: 47 - gauugcacuacccaucgcccac - 68
• Evidence: experimental; Illumina [1]

References

1. PMID:25656283 "microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach" Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC Parasit Vectors. 8:83(2015).