miRBase entry: sfr-mir-10499a-1

Stem-loop sfr-mir-10499a-1


Accession
MI0033628
Description
Spodoptera frugiperda sfr-mir-10499a-1 precursor miRNA


Sequence

gcaugggacaguaCAAGGGUUUAAAACUCCAUACauguauggaaucugCAUGGAGUUUCAAACUCUUGGAuugcucuaugc
(((((((.((((.(((((((((.(((((((((.((.(........))).))))))))).))))))))).)))).)))))))

Structure
       a    a         A         A  u uau 
gcauggg cagu CAAGGGUUU AAACUCCAU Ca g   g
||||||| |||| ||||||||| ||||||||| || |    
cguaucu guuA GUUCUCAAA UUUGAGGUA gu c   g
       c    G         C         C  - uaa 


Annotation confidence Not enough data
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Genome context
JQCY02003683.1: 100830-100910 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from sfr-mir-10499a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sfr-miR-10499a-5p

Accession MIMAT0041931
Description Spodoptera frugiperda sfr-miR-10499a-5p mature miRNA
Sequence 14 - CAAGGGUUUAAAACUCCAUAC - 34
Evidence experimental
Illumina [1]

Mature sfr-miR-10499a-3p

Accession MIMAT0041932
Description Spodoptera frugiperda sfr-miR-10499a-3p mature miRNA
Sequence 49 - CAUGGAGUUUCAAACUCUUGGA - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25693181
    Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21
    Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK
    PLoS One (2015) 10:e0116988