miRBase entry: sly-MIR408

Stem-loop sly-MIR408


Accession
MI0033679
Description
Solanum lycopersicum sly-MIR408 precursor miRNA

Literature search
9 open access papers mention sly-MIR408
(22 sentences)

Sequence

gauagACGGGGACGAGCCAGAGCAUGagaugugcaauuuuugcuuugccuauuccaugcacugccucuucccuggcucuccu
((.((.((((((.(((.(((.(((((.((((.((((........)))).)))).))))).))).))).)))))).)).))..

Structure
--  u  A      C   C   A     a    u    uuu 
  ga ag CGGGGA GAG CAG GCAUG gaug gcaa   u
  || || |||||| ||| ||| ||||| |||| ||||    
  cu uc gucccu cuc guc cguac uuau cguu   u
uc  c  g      u   c   a     c    c    ucg 


Annotation confidence Not enough data
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Genome context
chr1: 91040515-91040596 [-]

Database links

Mature sly-miR408

Accession MIMAT0042005
Description Solanum lycopersicum sly-miR408 mature miRNA
Sequence 6 - ACGGGGACGAGCCAGAGCAUG - 26
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195