Stem-loop sequence sly-MIR530

Accession

MI0033685 (change log)

Description

Solanum lycopersicum miR530 stem-loop

Literature search

3 open access papers mention sly-MIR530
(7 sentences)

Stem-loop

   --uua       uu             ag  a        guu 
5'      ucugcau  gcaccugcaccuu  ug acgaauua   c
        |||||||  |||||||||||||  || ||||||||   g
3'      agacgua  uguggauguggaa  ac ugcuuaau   c
   aaaac       cu             ag  g        aug 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (SL2.50; GCA_000188115.2): chr9: 1677560-1677646 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0033685

Mature sequence sly-miR530

• Accession: MIMAT0042011
• Sequence: 62 - agguguagguguucaugcaga - 82
• Evidence: experimental; Illumina [1]

References

1. PMID:25218481 "Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum" Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N Virus Res. 195:183-195(2015).