miRBase entry: sly-MIR10533

Stem-loop sly-MIR10533


Accession
MI0033693
Description
Solanum lycopersicum sly-MIR10533 precursor miRNA


Sequence

aaagaUCUUAUGAAUUCUAGGUCUUCUuucaucagcccaauuucuucuuuuauaaaaacaauugaauaagcuugaaauuuaacaaauuauuguaguuuuugauuagaagauuuaugaauaguaagaagucccgcuucucaaugagugauagaccacucucuaugaaucuucuacucaaaaacuuuaaaaaauugcuuaauuucgaagcucagucaauugcuucaauaaaggaagaaauuaggccggugaaagacaacuuagaguucauaagaucuaua
..((((((((((((((((((((..(((((((((.(((.(((((((((((((((..((.(((((((...(((((((((((...(((.((.(((.(((((((((.(((((((((((((.......((((((...))))))....(((((......)))))..))))))))))))).))))))))).))).)).)))...)))))).)))))...))))))).))..))))))))))))))).))).)))))))))..))))))))))))))))))))...

Structure
-aa                    CU         a   c               aa  a       aua     -      uaa   a  a   u         u             ---------------aauagua      c 
   agaUCUUAUGAAUUCUAGGU  UCUuucauc gcc aauuucuucuuuuau  aa caauuga   agcuu gaaauu   caa uu uug aguuuuuga uagaagauuuaug                      agaagu  
   ||||||||||||||||||||  ||||||||| ||| |||||||||||||||  || |||||||   ||||| ||||||   ||| || ||| ||||||||| |||||||||||||                      |||||| c
   ucuagaauacuugagauuca  agaaagugg cgg uuaaagaaggaaaua  uu guuaacu   ucgaa cuuuaa   guu aa aau ucaaaaacu aucuucuaaguau                      ucuucg  
aua                    ac         c   a               ac  c       gac     g      uuc   a  a   u         c             cucucaccagauagugaguaac      c 


Annotation confidence Not enough data
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Genome context
chr12: 1443488-1443765 [+]

Database links

Mature sly-miR10533

Accession MIMAT0042019
Description Solanum lycopersicum sly-miR10533 mature miRNA
Sequence 6 - UCUUAUGAAUUCUAGGUCUUCU - 27
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195