miRBase entry: sly-MIR10536

Stem-loop sly-MIR10536


Accession
MI0033698
Description
Solanum lycopersicum sly-MIR10536 precursor miRNA


Sequence

aaggaagcugacgauuagaacaugucaaaggaaucgguccaaugcagcugacuaacgugcuuauaucaaguguuguaaacucguuaguuaacuuuguuAGACAUGUUCUAAUCGUCAGCUUCcuucu
((((((((((((((((((((((((((...(((.....)))...((((.(((((((((.(.(((((........))))).).)))))))))...))))..))))))))))))))))))))))))))..

Structure
--                          aaaggaaucgguccaau    --c         u c     uca 
  aaggaagcugacgauuagaacauguc                 gcag   ugacuaacg g uuaua   a
  ||||||||||||||||||||||||||                 ||||   ||||||||| | |||||    
  uucCUUCGACUGCUAAUCUUGUACAG                 uguu   auugauugc c aaugu   g
uc                          ---------------Au    uca         u a     ugu 


Annotation confidence Not enough data
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Genome context
chr4: 64023701-64023827 [-]

Database links

Mature sly-miR10536

Accession MIMAT0042024
Description Solanum lycopersicum sly-miR10536 mature miRNA
Sequence 99 - AGACAUGUUCUAAUCGUCAGCUUC - 122
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195