miRBase entry: sly-MIR10535b

Stem-loop sly-MIR10535b


Accession
MI0033701
Description
Solanum lycopersicum sly-MIR10535b precursor miRNA


Sequence

aagggUUGGCAUGAGUUUGUGAAAGCCGGagguuuaggagcaaaguacaauuauuuucgcaaauaauuauaucuuuugcucuuaaaccuuuagcuuuaacaaauuugugccaacccuuug
((((((((((((((((((((.(((((.((((((((((((((((((((.((((((((....)))))))).)))..))))))))))))))))).))))).))))))))))))))))))))..

Structure
--                    G     C                 --   c        u 
  aagggUUGGCAUGAGUUUGU AAAGC GGagguuuaggagcaaa  gua aauuauuu c
  |||||||||||||||||||| ||||| |||||||||||||||||  ||| ||||||||  
  uucccaaccguguuuaaaca uuucg uuuccaaauucucguuu  uau uuaauaaa g
gu                    a     a                 uc   a        c 


Annotation confidence Not enough data
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Genome context
chr8: 3438186-3438305 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sly-MIR10535b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sly-miR10535b

Accession MIMAT0042027
Description Solanum lycopersicum sly-miR10535b mature miRNA
Sequence 6 - UUGGCAUGAGUUUGUGAAAGCCGG - 29
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195