miRBase entry: sly-MIR10539

Stem-loop sly-MIR10539


Accession
MI0033707
Description
Solanum lycopersicum sly-MIR10539 precursor miRNA


Sequence

uuuguuggugauugugguucgaaaauugauguugauuaucccuuuauauuagucugguauuuucucuguuucaauuuauuuauucuauuuauuuuuauaaucuguuucaaauuuuuauauauuuaaauucugaacucgcauacacgugauguacaaaauguauagacacaacauuacaauCUUGGAACCACAGUUACCACCauacu
..((.(((((((((((((((.((.((((((((((......((.............)).........((...((..((((.................))))..))...))....(((((((((((......((.((((((......)))).)).)))))))))))))..))))))..)))).)).))))))))))))))).))....

Structure
--uu  u               g  a    --      auuaucccuuuauauuagucugguauuuucucuguuucaauuuauuuauucuauuuauuuuuauaaucuguuucaaauu           aaauuc  a  -    au 
    ug uggugauugugguuc aa auug  auguug                                                                               uuuauauauuu      ug ac ucgc  a
    || ||||||||||||||| || ||||  ||||||                                                                               |||||||||||      || || ||||   
    aC ACCAUUGACACCAAG UU uaac  uacaac                                                                               agauauguaaa      ac ug agug  c
ucau  C               G  C    au      -----------------------------------------------------------------------------ac           ------  a  u    ca 


Annotation confidence Not enough data
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Genome context
chr12: 4194340-4194545 [-]

Database links

Mature sly-miR10539

Accession MIMAT0042033
Description Solanum lycopersicum sly-miR10539 mature miRNA
Sequence 181 - CUUGGAACCACAGUUACCACC - 201
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25218481
    Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
    "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
    "Virus Res (2015) 195:183-195