Stem-loop sly-MIR159b

Accession

MI0033710

Description

Solanum lycopersicum sly-MIR159b precursor miRNA

Sequence

aagguagagcucuucugaauuccaaagaggaucuaagagggaaaaucgagcugcuaaucuauggaucccucaauccuaucuauucucaaaauaauuuuagauagguuugugguuugcauauaucaggagcuguauuuacucuucuaggauccuuaUUGGAAAGAAGGGAGCUCUACacuug
(((((((((((((.((...((((((.((((((((.((((((.((((..((((.((.((.((((.(..((.(((.((((((((...............)))))))).))).))..).)))).)).)).))))..)))).).))))).)))))))).))))))...)))))))))))).))).

Structure

-   -          u  gaa      a        a     - a    cg    g  a  c    g uc  u   u        uucuca 
 aag guagagcucu cu   uuccaa gaggaucu agagg g aaau  agcu cu au uaug a  cc caa ccuaucua      a
 ||| |||||||||| ||   |||||| |||||||| ||||| | ||||  |||| || || |||| |  || ||| ||||||||      a
 uuc CAUCUCGAGG GA   AAGGUU uuccuagg ucuuc c uuua  ucga ga ua auac u  gg guu ggauagau      a
g   a          -  AGA      a        a     u a    ug    g  c  u    g uu  u   u        uuuaau 

Annotation confidence Not enough data

Genome context

chr8: 64336654-64336834 [-]

Mature sly-miR159b

• Accession: MIMAT0042036
• Description: Solanum lycopersicum sly-miR159b mature miRNA
• Sequence: 156 - UUGGAAAGAAGGGAGCUCUAC - 176
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25218481
   Prediction and characterization of Tomato leaf curl New Delhi virus (ToLCNDV) responsive novel microRNAs in Solanum lycopersicum
   "Pradhan B, Naqvi AR, Saraf S, Mukherjee SK, Dey N"
   "Virus Res (2015) 195:183-195