Stem-loop sequence egr-mir-96

Accession

MI0035040 (change log)

Description

Echinococcus granulosus miR-96 stem-loop

Literature search

2 open access papers mention egr-mir-96
(5 sentences)

Stem-loop

   ---a              a        aguguuccccuugacucaacgcu 
5'     uuggcacuuuugga uugucacc                       g
       |||||||||||||| ||||||||                        
3'     agccgugaaaaucu ggcagugg                       g
   caca              -        cguucgggcguuuccgugguggc 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM52419v1; GCA_000524195.1): APAU02000054.1: 418200-418297 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0035040

Mature sequence egr-miR-96-5p

• Accession: MIMAT0043034
• Sequence: 1 - auuggcacuuuuggaauuguc - 21
• Evidence: experimental; Illumina [1]

Mature sequence egr-miR-96-3p

• Accession: MIMAT0043035
• Sequence: 76 - gacggucuaaaagugccgaaca - 97
• Evidence: experimental; Illumina [1]

References

1. PMID:25656283 "microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach" Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC Parasit Vectors. 8:83(2015).