Stem-loop sequence mdm-MIR399k

Accession

MI0035604 (change log)

Description

Malus domestica miR399k stem-loop

Literature search

6 open access papers mention mdm-MIR399k
(8 sentences)

Stem-loop

   aacaa     -   u      u     cu      ag       aaa    aau g       - c    a 
5'      ugagc gaa uaguug agggc  cucucc  uggcagg   uaua   g ucauggg g augg u
        ||||| ||| |||||| |||||  ||||||  |||||||   ||||   | ||||||| | |||| u
3'      auucg cuu gucagc ucccg  gagagg  accgucc   auau   c agugcuc c uguc u
   --uug     u   c      u     uu      aa       --a    --- g       u u    u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: MDC018343.157: 12734-12869 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0035604

Mature sequence mdm-miR399k

• Accession: MIMAT0043550
• Sequence: 97 - ugccaaaggagaguugcccuu - 117
• Evidence: experimental; Illumina [1]

References

1. "Identification of apple miRNAs and their potential role in fire blight resistance" Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I Trees Genet Genomes. 11:812(2014).