Stem-loop sequence mdm-MIR169h

Accession

MI0035629 (change log)

Description

Malus domestica miR169h stem-loop

Literature search

4 open access papers mention mdm-MIR169h
(9 sentences)

Stem-loop

   uauucuacuua      ----   --uu     u       u     u gg  c      ugc    c     ag             -    aaugcucccauacaauauuuguauaucaacccuaaucuuguagaucuauauauguauauauguauaugugcauagcauau 
5'            uguggu    auu    ucauc uaagucu gcaug g  aa gaggua   agug agcca  gaugacuugccgg caac                                                                                a
              ||||||    |||    ||||| ||||||| ||||| |  || ||||||   |||| |||||  ||||||||||||| ||||                                                                                 
3'            gcacca    uag    aguag guuuaga cguac c  uu cuccgu   uuac ucggu  cugcugaacggcu guug                                                                                c
   --------cua      acaa   cagc     u       u     u uu  u      -uu    a     cu             a    agucacagkguucuaguacauagaauaguuaguacguauaugcguacucuacuguaguuguauguacuauguaggguaua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: MDC002922.166: 127-458 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0035629

Mature sequence mdm-miR169h

• Accession: MIMAT0043576
• Sequence: 62 - cagccaaggaugacuugccgg - 82
• Evidence: experimental; Illumina [1]

References

1. "Identification of apple miRNAs and their potential role in fire blight resistance" Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I Trees Genet Genomes. 11:812(2014).