miRBase entry: mdm-MIR10996a

Stem-loop mdm-MIR10996a


Accession
MI0035633
Description
Malus domestica mdm-MIR10996a precursor miRNA


Sequence

uucucgagaagagcugacaugcaacugagaugcuaaggugaugguauuccaaaccaaccaugcuaugucauguugaaaaguuaaaacauaugacgguuugwgaugggcuugaaaugccaACACCAUCGCAUCUCAUGUUCCacguaaguuacucuccacu
.....((((..((((.((.((.(((((((((((...((((.(((((((.(((.(((.(((.(((..(((((((..............)))))))))).)).).)))..))).))))))).))))...)))))))).))).)).)).))))..))))....

Structure
uucuc    ag    g  a  c   -        uaa    a       c   -a   a -  u   au       ugaaaa 
     gaga  agcu ac ug aac ugagaugc   ggug ugguauu caa  cca c ca gcu  gucaugu      g
     ||||  |||| || || ||| ||||||||   |||| ||||||| |||  ||| | || |||  |||||||       
     cucu  uuga ug aC UUG ACUCUACG   CCAC accguaa guu  ggu g gu ugg  caguaua      u
-ucac    ca    a  c  C   U        CUA    A       a   cg   a w  u   --       caaaau 


Annotation confidence Not enough data
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Genome context
MDC010449.276: 6773-6932 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mdm-MIR10996a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdm-miR10996a

Accession MIMAT0043580
Description Malus domestica mdm-miR10996a mature miRNA
Sequence 120 - ACACCAUCGCAUCUCAUGUUCC - 141
Evidence experimental
Illumina [1]

References

  1. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812