Stem-loop mdm-MIR169n

Accession

MI0035670

Description

Malus domestica mdm-MIR169n precursor miRNA

Literature search

4 open access papers mention mdm-MIR169n
(9 sentences)

Sequence

1271 reads, 308.0 reads per million, 32 experiments

uaacugaugagggaagaaagguccuacaugaggaugaagagccguguuuugUAGCCAAGGAUGACUUGCCUGcaaccucccaaaggccuccgaaaaauuuauguguacugugagagauaugcuugguuagcuuagcuaguguuagcuaagcuagcuagcuaguuugcuagugguuuaagaauccuugucugguauacaGGCAGUCUCCUUGGCUAUCgagacagguucuuuucucucaugcugggccucuucuuccaugggucuc
.....(((...(((((((((((((..((((((((.((((((((.(((((((((((((((((.((((.(((((..(((.....((((..((..(((.......(((((((.....)).))))).(((((((((((((((....)))))))))))))))(((((....)))))..)))..))..))))....)))...))))))))))))))))))).))))))))))))))))).))))))..)))))).)))))))....)))..

Structure

uaacu   -gag       -      ua      -  u        g       -          U    U     -ca   uccca    cc  cg   aauuuauguguacugugagagauaugcu               g 
     gau    ggaagaa aggucc  caugag ga gaagagcc uguuuug UAGCCAAGGA GACU GCCUG   acc     aagg  uc  aaa                            ugguuagcuuagcua u
     |||    ||||||| ||||||  |||||| || |||||||| ||||||| |||||||||| |||| |||||   |||     ||||  ||  |||                            |||||||||||||||  
     cug    ccuucuu uccggg  guacuc cu uuucuugg acagagC AUCGGUUCCU CUGA CGGac   ugg     uucc  ag  uuu                            aucgaucgaaucgau g
---cu   ggua       c      uc      u  -        -       U          -    -     aua   -ucug    ua  aa   ------------ggugaucguuugaucg               u 

Annotation confidence High

Genome context

MDC003479.331: 24710-24974 [-]

Mature mdm-miR169n-5p

• Accession: MIMAT0043619
• Description: Malus domestica mdm-miR169n-5p mature miRNA
• Sequence: 52 - UAGCCAAGGAUGACUUGCCUG - 72
• Evidence: experimental ; Illumina [1]

Mature mdm-miR169n-3p

• Accession: MIMAT0056812
• Description: Malus domestica mdm-miR169n-3p mature miRNA
• Sequence: 199 - GGCAGUCUCCUUGGCUAUC - 217
• Evidence: experimental ; unknown

References

1. Identification of apple miRNAs and their potential role in fire blight resistance
   "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
   Tree Genet Genomes. (2014) 11:812