Stem-loop sequence mdm-MIR169o

Accession

MI0035683 (change log)

Description

Malus domestica miR169o stem-loop

Literature search

4 open access papers mention mdm-MIR169o
(9 sentences)

Stem-loop

   uaaaauucaga        ----     u         ug        u   u gu -   -     ug      c  a     ---   c      ----  aa    ---u   g 
5'            ggaagaga    agucu guaugaagg  aagagcca guu g  a gcc aggga  acuugc ua uuaga   ucu auaugu    gc  aagu    acu a
              ||||||||    ||||| |||||||||  |||||||| ||| |  | ||| |||||  |||||| || |||||   ||| ||||||    ||  ||||    |||  
3'            ccuucucu    ucaga cguacuuuc  uucucggu cag c  u cgg uuccu  ugaacg au gaucu   gga uauaua    cg  uucg    uga c
   -----uacgua        ccuu     u         ua        -   u ug u   c     gu      a  r     uua   u      uauc  ag    caau   a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates: MDC015971.68: 4397-4610 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0035683

Mature sequence mdm-miR169o

• Accession: MIMAT0043632
• Sequence: 52 - uagccagggaugacuugccu - 71
• Evidence: experimental; Illumina [1]

References

1. "Identification of apple miRNAs and their potential role in fire blight resistance" Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I Trees Genet Genomes. 11:812(2014).