miRBase entry: lja-MIR11068a

Stem-loop lja-MIR11068a


Accession
MI0035738
Description
Lotus japonicus lja-MIR11068a precursor miRNA


Sequence

agcAUCUCUAAUGCAAGGUUCUuaguucuuauuuuggaguuaagaacuaagaacuaagaACUUUACCAUUGGAGGUGCu
(((((((((((((.(((((((((((((((((.(((........))).)))))))))))))))))..)))))))))))))

Structure
             -C                 u   gga 
agcAUCUCUAAUG  AAGGUUCUuaguucuua uuu   g
|||||||||||||  ||||||||||||||||| |||    
uCGUGGAGGUUAC  UUUCAagaaucaagaau aag   u
             CA                 c   aau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr1: 3237026-3237104 [+]

Database links

Mature lja-miR11068a-5p

Accession MIMAT0043703
Description Lotus japonicus lja-miR11068a-5p mature miRNA
Sequence 4 - AUCUCUAAUGCAAGGUUCU - 22
Evidence experimental
Illumina [1]

Mature lja-miR11068a-3p

Accession MIMAT0043704
Description Lotus japonicus lja-miR11068a-3p mature miRNA
Sequence 60 - ACUUUACCAUUGGAGGUGC - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256