miRBase entry: lja-MIR164

Stem-loop lja-MIR164


Accession
MI0035755
Description
Lotus japonicus lja-MIR164 precursor miRNA

Literature search
1 open access papers mention lja-MIR164
(1 sentences)

Sequence

gauuggaguggagggugaaccACGCUGGAGAAGCAGGGCACaugcuugaccucucgaaauuaaucuucugaucgagcauaugcucuggcucuccagcauggauucuuucuccuacaauu
(((((....((((((.((((((.((((((((..(((((((.((((((((..((..(((.......))).)))))))))).)))))))..)))))))).))).))).))))))..)))))

Structure
     gagu      u   -   C        AG       C        cc  uc   au 
gauug    ggaggg gaa ccA GCUGGAGA  CAGGGCA augcuuga  uc  gaa  u
|||||    |||||| ||| ||| ||||||||  ||||||| ||||||||  ||  |||  a
uuaac    ccucuu cuu ggu cgaccucu  gucucgu uacgagcu  ag  cuu  a
     --au      u   a   a        cg       a        --  -u   cu 


Annotation confidence Not enough data
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Genome context
Chr3: 34602134-34602252 [-]

Database links

Mature lja-miR164-5p

Accession MIMAT0043726
Description Lotus japonicus lja-miR164-5p mature miRNA
Sequence 22 - ACGCUGGAGAAGCAGGGCAC - 41
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256