miRBase entry: lja-MIR11072h

Stem-loop lja-MIR11072h


Accession
MI0035760
Description
Lotus japonicus lja-MIR11072h precursor miRNA


Sequence

aaaggauauauuaauugaaggguuaauccucuaauuggucccugugguuguguggccgucugaaauuagucucucccguaaaaucuaaguccucgcguuugaaaaaguguguguagcagguccucgccggagggacuaauuuccacacacuuuucaaacgcgaggacuuagauuuuacgggAGGGACUAAUUUCAGACGGCcacacaaccauagggaccaauuagaggauuaucccuuaauugaauguga
.....((((.((((((((.(((.((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((((.....(((((((....)).)))))......))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).)))))))))))))))..

Structure
aaagg    a        a   u                                                                                  a       -uagca     -  g 
     auau uuaauuga ggg uaauccucuaauuggucccugugguuguguggccgucugaaauuagucucucccguaaaaucuaaguccucgcguuugaaaa gugugug      ggucc uc c
     |||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||      ||||| ||  
     ugua aguuaauu ccc auuaggagauuaaccagggauaccaacacacCGGCAGACUUUAAUCAGGGAgggcauuuuagauucaggagcgcaaacuuuu cacacac      ucagg ag c
---ag    -        -   u                                                                                  -       cuuuaa     g  g 


Annotation confidence Not enough data
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Genome context
Chr2: 30326222-30326471 [-]

Database links

Mature lja-miR11072h-3p

Accession MIMAT0043731
Description Lotus japonicus lja-miR11072h-3p mature miRNA
Sequence 182 - AGGGACUAAUUUCAGACGGC - 201
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256