miRBase entry: lja-MIR11082j

Stem-loop lja-MIR11082j


Accession
MI0035773
Description
Lotus japonicus lja-MIR11082j precursor miRNA


Sequence

ucccaccuauagcuuuuugugugguuucuuacgggaauCACAGAGAGUUGGUUGGACUuaggaggucuuguuucaggccgauuggga
((((......((((........))))......)))).........((((((((((((((...)))))).......))))))))....

Structure
ucccaccuauagcuuuuugugugguuucuuacgggaauCACAGAG        -------      a 
                                             AGUUGGUU       GGACUu  
                                             ||||||||       |||||| g
                                             uuagccgg       ucugga  
-----------------------------------------aggg        acuuugu      g 


Annotation confidence Not enough data
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Genome context
Chr0: 1806137-1806223 [+]

Database links

Mature lja-miR11082j-3p

Accession MIMAT0043745
Description Lotus japonicus lja-miR11082j-3p mature miRNA
Sequence 39 - CACAGAGAGUUGGUUGGACU - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256