miRBase entry: lja-MIR11072i

Stem-loop lja-MIR11072i


Accession
MI0035781
Description
Lotus japonicus lja-MIR11072i precursor miRNA


Sequence

uugccaaaucagcgcucgccggagcucugaACUCUGGCGAGGAUCCGCUCCAaauaauuuucaaacaugaggacaauuuacaaugaauuuuucgggGAGGGACCUAGAUCAGACGGcga
(((((...((((.((((....)))).))))..((((((.(((.(((.((((....((..((((....((((.....))))...))))..))....)))))))))).).))))).)))))

Structure
     aaaucagcgcucgccggagcucugaAC     - G   A   G    Aaau  uu    aaca    g 
uugcc                           UCUGG C AGG UCC CUCC    aa  uuca    ugag a
|||||                           ||||| | ||| ||| ||||    ||  ||||    |||| c
agcGG                           AGACU G UCC AGG GAGg    uu  aagu    auuu a
     --------------------------C     A A   -   -    ggcu  uu    -aac    a 


Annotation confidence Not enough data
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Genome context
Chr1: 39543029-39543147 [+]

Database links

Mature lja-miR11072i-5p

Accession MIMAT0043755
Description Lotus japonicus lja-miR11072i-5p mature miRNA
Sequence 31 - ACUCUGGCGAGGAUCCGCUCCA - 52
Evidence experimental
Illumina [1]

Mature lja-miR11072i-3p

Accession MIMAT0043756
Description Lotus japonicus lja-miR11072i-3p mature miRNA
Sequence 97 - GAGGGACCUAGAUCAGACGG - 116
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256