miRBase entry: lja-MIR11075b

Stem-loop lja-MIR11075b


Accession
MI0035782
Description
Lotus japonicus lja-MIR11075b precursor miRNA


Sequence

uccuucaggucugCUUUGGUCAUUGGUUGAUCUUccaugguugaucaagcaaagaaaagagacaggagaaagccugcucugaugccacuugauacagcggaaGUCGUACUAGGAUUGCAAGCgcaaauccuaagga
(((((.(((..((((((((((.((((((((.(((((...((((((((((........((((.((((......)))))))).......)))))).)))))))))))).)))))))))).))))).....))))))))

Structure
     c   ---uc     -     A     -   U     aug    -      caaagaaa    a    ag 
uccuu agg     ugCUU UGGUC UUGGU UGA CUUcc   guug aucaag        agag cagg  a
||||| |||     ||||| ||||| ||||| ||| |||||   |||| ||||||        |||| ||||   
aggaa ucc     gCGAA GUUAG GAUCA GCU Gaagg   cgac uaguuc        ucuc gucc  a
     -   uaaac     C     -     U   -     ---    a      -accguag    -    ga 


Annotation confidence Not enough data
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Genome context
Chr2: 10482021-10482156 [+]

Database links

Mature lja-miR11075b-5p

Accession MIMAT0043757
Description Lotus japonicus lja-miR11075b-5p mature miRNA
Sequence 14 - CUUUGGUCAUUGGUUGAUCUU - 34
Evidence experimental
Illumina [1]

Mature lja-miR11075b-3p

Accession MIMAT0043758
Description Lotus japonicus lja-miR11075b-3p mature miRNA
Sequence 103 - GUCGUACUAGGAUUGCAAGC - 122
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256