miRBase entry: lja-MIR7526k

Stem-loop lja-MIR7526k


Accession
MI0035785
Description
Lotus japonicus lja-MIR7526k precursor miRNA


Sequence

agauagcuguaacuuccgcuaucaagauagcuguaacuuccgcuaucaagauagcuguaacugcuaucuuaauagcggaaguuacagcuaccuUGAUAGCGGACGUUACAGCUauuu
.((((((((((((.((((((((((((.(((((((((((((((((((.((((((((.......)))))))).))))))))))))))))))).)))))))))))).)))))))))))).

Structure
a            u            a                   c        ug 
 gauagcuguaac uccgcuaucaag uagcuguaacuuccgcuau aagauagc  u
 |||||||||||| |||||||||||| ||||||||||||||||||| ||||||||  a
 uuaUCGACAUUG AGGCGAUAGUuc aucgacauugaaggcgaua uucuaucg  a
u            C            c                   a        uc 


Annotation confidence Not enough data
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Genome context
Chr4: 10985451-10985567 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from lja-MIR7526k
Name Accession Chromosome Start End Strand Confidence




Database links

Mature lja-miR7526k-3p

Accession MIMAT0043761
Description Lotus japonicus lja-miR7526k-3p mature miRNA
Sequence 94 - UGAUAGCGGACGUUACAGCU - 113
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256