miRBase entry: lja-MIR11087

Stem-loop lja-MIR11087


Accession
MI0035790
Description
Lotus japonicus lja-MIR11087 precursor miRNA


Sequence

uagccuguauggguuugguugaaacggguuggguuguguuaacccggggucuuaacgagucaagAAAAUAUGAACCCAACCCGGCucgcuacgagcucgcgggcug
((((((((..(((((((..(((..((((((((((((((((......((.((.....)).)).....))))).)))))))))))..)))...)))))))))))))))

Structure
        au       -gu   aa           -     aacccg  g  u 
uagccugu  ggguuug   uga  cggguuggguu guguu      gg uc u
||||||||  |||||||   |||  ||||||||||| |||||      || || a
gucgggcg  cucgagc   gcu  GCCCAACCCAA UAUAA      cu ag a
        --       auc   CG           G     -AAgaa  g  c 


Annotation confidence Not enough data
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Genome context
Chr2: 22111364-22111469 [-]

Database links

Mature lja-miR11087-3p

Accession MIMAT0043768
Description Lotus japonicus lja-miR11087-3p mature miRNA
Sequence 65 - AAAAUAUGAACCCAACCCGGC - 85
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256