miRBase entry: lja-MIR11093

Stem-loop lja-MIR11093


Accession
MI0035801
Description
Lotus japonicus lja-MIR11093 precursor miRNA


Sequence

guuuuaaucuaaaccguuuaugauuagaucuaaaggucgugauuuauucucaugaucucacauaaaaacacauuucucauaagauguaucucaagagaaagguaacuuuaugugagaaaauaagaAUAAAUCACGACCGUUAGAUCugaucaugaacgguucagauuaagac
((((((((((.((((((((((((((((((((((.((((((((((((((((.((..(((((((((((...((.((((((...(((....)))...)))))).))...)))))))))))..)).)))))))))))))))).)))))))))))))))))))))).))))))))))

Structure
          a                      a                c  ga           aac  a      aua   u 
guuuuaaucu aaccguuuaugauuagaucuaa ggucgugauuuauucu au  ucucacauaaa   ac uuucuc   aga g
|||||||||| |||||||||||||||||||||| |||||||||||||||| ||  |||||||||||   || ||||||   |||  
cagaauuaga uuggcaaguacuaguCUAGAUU CCAGCACUAAAUAaga ua  agaguguauuu   ug aaagag   ucu u
          c                      G                a  aa           caa  g      aac   a 


Annotation confidence Not enough data
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Genome context
Chr4: 22962214-22962385 [+]

Database links

Mature lja-miR11093-3p

Accession MIMAT0043781
Description Lotus japonicus lja-miR11093-3p mature miRNA
Sequence 126 - AUAAAUCACGACCGUUAGAUC - 146
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256