Stem-loop lja-MIR11089b

Accession

MI0035802

Description

Lotus japonicus lja-MIR11089b precursor miRNA

Sequence

ccgucacuuuacguugauuagaaagaccuaaaccaaugaaccuugauuuuagagagacguaagacaugauaaaaauugaguuuuagguccucuaaaaucAUGGUUCUUUGGUUUAGGUCCcucuaaaaucaugguuccuugg
....((....((..((((((((..((((((((((((.(((((.(((((((((((.(((.((((((.((((....)))).)))))).)))))))))))))).))))).))))))))))))..))))..))))..))....)).

Structure

ccgu  cuuu  gu    --    aa            u     u           a   g      a    a 
    ca    ac  ugau  uaga  gaccuaaaccaa gaacc ugauuuuagag gac uaagac ugau a
    ||    ||  ||||  ||||  |||||||||||| ||||| ||||||||||| ||| |||||| ||||  
    gu    ug  acua  aucu  CUGGAUUUGGUU CUUGG Acuaaaaucuc cug auuuug guua a
---g  uccu  gu    aa    cC            U     U           -   g      a    a 

Annotation confidence Not enough data

Genome context

Chr4: 12695326-12695467 [+]

Mature lja-miR11089b-3p

• Accession: MIMAT0043782
• Description: Lotus japonicus lja-miR11089b-3p mature miRNA
• Sequence: 100 - AUGGUUCUUUGGUUUAGGUCC - 120
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256