miRBase entry: lja-MIR11095

Stem-loop lja-MIR11095


Accession
MI0035804
Description
Lotus japonicus lja-MIR11095 precursor miRNA


Sequence

gcuaaguccauguauguaaguccuUCUAUAAUUGAUUCUGAAGCCaaaaucaauuuuggggagaagcuucuuugaauagcuuacgggugccagaauugauuaugaAUUCAGAAUCAAUUGUAGUAGggguuccagacaugcacuaagu
(((.(((.(((((.((.((.((((.(((((((((((((((((..((.((((((((((((.(..(((((.........))))).....).)))))))))))).))..))))))))))))))))).)))).)).)).))))).))).)))

Structure
   a   c     a  u  g    U                 GC  a            g ---ag     ucu 
gcu agu caugu ug aa uccu CUAUAAUUGAUUCUGAA  Ca aaucaauuuugg g     aagcu   u
||| ||| ||||| || || |||| |||||||||||||||||  || |||||||||||| |     |||||   u
uga uca guaca ac uu ggGA GAUGUUAACUAAGACUU  gu uuaguuaagacc u     uucga   g
   a   c     g  c  g    U                 Aa  a            g gggca     uaa 


Annotation confidence Not enough data
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Genome context
Chr1: 22830114-22830261 [-]

Database links

Mature lja-miR11095-5p

Accession MIMAT0043784
Description Lotus japonicus lja-miR11095-5p mature miRNA
Sequence 25 - UCUAUAAUUGAUUCUGAAGCC - 45
Evidence experimental
Illumina [1]

Mature lja-miR11095-3p

Accession MIMAT0043785
Description Lotus japonicus lja-miR11095-3p mature miRNA
Sequence 106 - AUUCAGAAUCAAUUGUAGUAG - 126
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256