miRBase entry: lja-MIR11096a

Stem-loop lja-MIR11096a


Accession
MI0035805
Description
Lotus japonicus lja-MIR11096a precursor miRNA


Sequence

cggguguaaacuucagggaugguuuuugcuaAUUUUGAAGUUUGGGGACGAU
((..(.((((((((((((.((((....)))).)))))))))))).)..))..

Structure
--  gg g            a    u 
  cg  u uaaacuucaggg uggu u
  ||  | |||||||||||| ||||  
  GC  G GUUUGAAGUUUU aucg u
UA  AG G            A    u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Chr1: 9982452-9982503 [+]

Database links

Mature lja-miR11096a-3p

Accession MIMAT0043786
Description Lotus japonicus lja-miR11096a-3p mature miRNA
Sequence 32 - AUUUUGAAGUUUGGGGACGAU - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256