miRBase entry: lja-MIR11077c

Stem-loop lja-MIR11077c


Accession
MI0035818
Description
Lotus japonicus lja-MIR11077c precursor miRNA


Sequence

aggaaaggaaaggaaaggaaaacacGGAAAUCGAGGAGUGAACUUGgacuauuccaaguucacuccucgauuuccguguuuuccuuuccuuuccuuuccu
((((((((((((((((((((((((((((((((((((((((((((((((....))))))))))))))))))))))))))))))))))))))))))))))))

Structure
                                                c 
aggaaaggaaaggaaaggaaaacacGGAAAUCGAGGAGUGAACUUGga u
||||||||||||||||||||||||||||||||||||||||||||||||  
uccuuuccuuuccuuuccuuuugugccuuuagcuccucacuugaaccu a
                                                u 


Annotation confidence Not enough data
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Genome context
Chr1: 35022735-35022834 [+]

Database links

Mature lja-miR11077c-5p

Accession MIMAT0043802
Description Lotus japonicus lja-miR11077c-5p mature miRNA
Sequence 26 - GGAAAUCGAGGAGUGAACUUG - 46
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256