miRBase entry: lja-MIR11109

Stem-loop lja-MIR11109


Accession
MI0035833
Description
Lotus japonicus lja-MIR11109 precursor miRNA


Sequence

cuuuuuaaaacucuuUCAUUGAUUGGUUGAAAUUCAugugaauccacuuaauuggaaggguuguccauauuuuuaguagacuccacauggauuuuaaccaaacaaugagagagcguugaagag
((((((((..(((((((((((.((((((((((((((((((..((((......)))).(((((..(.(......).)..))))))))))))))))))))))).)))))))))))..))))))))

Structure
        aa           A                  aauccacuuaauuggaa     gu c ua 
cuuuuuaa  cucuuUCAUUG UUGGUUGAAAUUCAugug                 ggguu  c a  u
||||||||  ||||||||||| ||||||||||||||||||                 |||||  | |   
gagaaguu  gagagaguaac aaccaauuuuagguacac                 cucag  g u  u
        gc           a                  -----------------     au a uu 


Annotation confidence Not enough data
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Genome context
Chr1: 49169364-49169486 [+]

Database links

Mature lja-miR11109-5p

Accession MIMAT0043824
Description Lotus japonicus lja-miR11109-5p mature miRNA
Sequence 16 - UCAUUGAUUGGUUGAAAUUCA - 36
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256