miRBase entry: lja-MIR11117a

Stem-loop lja-MIR11117a


Accession
MI0035850
Description
Lotus japonicus lja-MIR11117a precursor miRNA


Sequence

ccacuuucaccuUCUUCCUCUUCCUCCAUAACUcaaaucacauaaauucaaaaggaagaacaaggugaaugugauaaacauauaguuuuuuuuaggguuuugaauuucuagguuuaaggauuugagUUAUGGAGGAAGAGGAAGAAGauggaagagg
((.((((((.(((((((((((((((((((((((((((((((..((((((((((..(((((.(((.((.((((.....)))).)).))))))))....))))))))))....)).....))))))))))))))))))))))))))))).)))))).))

Structure
  a      c                             -----  --au          --gg     c   g  a    g 
cc cuuuca cuUCUUCCUCUUCCUCCAUAACUcaaauc     ac    aaauucaaaa    aagaa aag ug augu a
|| |||||| |||||||||||||||||||||||||||||     ||    ||||||||||    ||||| ||| || |||| u
gg gaaggu GAAGAAGGAGAAGGAGGUAUUgaguuuag     ug    uuuaaguuuu    uuuuu uuu au uaca a
  a      a                             gaauu  gauc          ggga     -   g  a    a 


Annotation confidence Not enough data
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Genome context
Chr1: 57698554-57698710 [+]

Database links

Mature lja-miR11117a-5p

Accession MIMAT0043847
Description Lotus japonicus lja-miR11117a-5p mature miRNA
Sequence 13 - UCUUCCUCUUCCUCCAUAACU - 33
Evidence experimental
Illumina [1]

Mature lja-miR11117a-3p

Accession MIMAT0043848
Description Lotus japonicus lja-miR11117a-3p mature miRNA
Sequence 127 - UUAUGGAGGAAGAGGAAGAAG - 147
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256