miRBase entry: lja-MIR11122

Stem-loop lja-MIR11122


Accession
MI0035859
Description
Lotus japonicus lja-MIR11122 precursor miRNA


Sequence

aaagaaacuugaccaugucaaccuucuccauuuuuaaauugauucuugaguuuuauuucuguaauaauugaagaaauaaagaaaaaucaaagugaUUUAAGUUGGGGAAGUUUGACauggucaauuuuuuuu
(((((((.(((((((((((((.((((((((..((((((((.(((.((((..(((((((((...........)))))))))......))))))))))))))).)))))))).))))))))))))).)))))))

Structure
       c             c        uu        g   c    ----gu         guaa 
aaagaaa uugaccaugucaa cuucucca  uuuaaauu auu uuga      uuuauuucu    u
||||||| ||||||||||||| ||||||||  |||||||| ||| ||||      |||||||||    a
uuuuuuu aacugguaCAGUU GAAGGGGU  GAAUUUag uga aacu      aaauaaaga    a
       u             U        -U        -   -    aaaaag         aguu 


Annotation confidence Not enough data
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Genome context
Chr1: 28484493-28484624 [+]

Database links

Mature lja-miR11122-3p

Accession MIMAT0043861
Description Lotus japonicus lja-miR11122-3p mature miRNA
Sequence 96 - UUUAAGUUGGGGAAGUUUGAC - 116
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256