Stem-loop lja-MIR11108l

Accession

MI0035867

Description

Lotus japonicus lja-MIR11108l precursor miRNA

Sequence

acccaucaucaaaucACAUUGGAGAUAAGUGAGUUGGaaauaaauuaaaaaauaaaauauagaaauucuaacucacuuaucuucaaagugacuggaugaugagu
...(((((((...((((.(((((((((((((((((((((..........................))))))))))))))))))))).))))...)))))))...

Structure

acc       aaa    A                     auaaauuaaaaa 
   caucauc   ucAC UUGGAGAUAAGUGAGUUGGaa            a
   |||||||   |||| |||||||||||||||||||||             
   guaguag   agug aacuucuauucacucaaucuu            u
uga       guc    a                     aaagauauaaaa 

Annotation confidence Not enough data

Genome context

Chr3: 18168161-18168264 [+]

Mature lja-miR11108l-5p

• Accession: MIMAT0043872
• Description: Lotus japonicus lja-miR11108l-5p mature miRNA
• Sequence: 16 - ACAUUGGAGAUAAGUGAGUUGG - 37
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256