miRBase entry: lja-MIR11126

Stem-loop lja-MIR11126


Accession
MI0035871
Description
Lotus japonicus lja-MIR11126 precursor miRNA


Sequence

acuuuuguuuuucucagccaaagaaaaauauuauuacuagUGUUCUGGGGACCCUGACCGGGgaCGGACAGGGGACCUAGGACAGGgcuggacccaccaaaagu
(((((((....((.(((((.....................(((((((((..(((((.(((....))).)))))..))))))))).))))))).....)))))))

Structure
       -uuuu  u     aaagaaaaauauuauuacuag         GA     A   G 
acuuuug     uc cagcc                     UGUUCUGGG  CCCUG CCG G
|||||||     || |||||                     |||||||||  ||||| |||  
ugaaaac     ag gucgG                     ACAGGAUCC  GGGAC GGC g
       caccc  -     --------------------G         AG     A   a 


Annotation confidence Not enough data
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Genome context
Chr5: 3615816-3615919 [+]

Database links

Mature lja-miR11126-5p

Accession MIMAT0043877
Description Lotus japonicus lja-miR11126-5p mature miRNA
Sequence 41 - UGUUCUGGGGACCCUGACCGGG - 62
Evidence experimental
Illumina [1]

Mature lja-miR11126-3p

Accession MIMAT0043878
Description Lotus japonicus lja-miR11126-3p mature miRNA
Sequence 65 - CGGACAGGGGACCUAGGACAGG - 86
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256