miRBase entry: lja-MIR11127

Stem-loop lja-MIR11127

Accession

MI0035873

Description

Lotus japonicus lja-MIR11127 precursor miRNA

Sequence

cgguuaaaauuuuccuuucacagCGGUUCGGACCCGCUGUAGAGCucgccguuguaaaagacuauacagcgguccgaaccgcuguaaaagauagauuauuuaccg
((((...(((((..((((.(((((((((((((((.((((((.((.((............)))).))))))))))))))))))))).))))..)))))....))))

Structure

    -uaa     uc    c               C      G  C  gccgu 
cggu    aauuu  cuuu acagCGGUUCGGACC GCUGUA AG uc     u
||||    |||||  |||| ||||||||||||||| |||||| || ||      
gcca    uuaga  gaaa ugucgccaagccugg cgacau uc ag     g
    uuua     ua    a               -      a  -  aaaau

Annotation confidence Not enough data

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Genome context

Chr4: 13560451-13560555 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from lja-MIR11127

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature lja-miR11127-5p

Accession	MIMAT0043880
Description	Lotus japonicus lja-miR11127-5p mature miRNA
Sequence	24 - CGGUUCGGACCCGCUGUAGAGC - 45
Evidence	experimental Illumina [1]

References

PubMed ID: 25967282
micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
"Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
"New Phytol (2015) 208:241-256