Stem-loop lja-MIR11139

Accession

MI0035895

Description

Lotus japonicus lja-MIR11139 precursor miRNA

Sequence

cuacuuuaaccggguauaguaggucaacacauuauuuuuuuaaagaaaaaauaucauuaaaaauuugucauauauuaauuuuuuuaaaaaaAAGAUGUGUUGACCUGUUAUAGCagguuaaaaaaagugg
(((((((((((.(.(((((((((((((((((((.((((((((((((((.(((((...(((....)))....)))))..)))))))))))))).))))))))))))))))))).).)))))....))))))

Structure

      ----     g g                   a              -a     -cau   a 
cuacuu    uaacc g uauaguaggucaacacauu uuuuuuuaaagaaa  aauau    uaa a
||||||    ||||| | ||||||||||||||||||| ||||||||||||||  |||||    |||  
ggugaa    auugg C AUAUUGUCCAGUUGUGUAG Aaaaaaauuuuuuu  uuaua    guu a
      aaaa     a G                   A              aa     uacu   u 

Annotation confidence Not enough data

Genome context

Chr1: 61984283-61984412 [+]

Mature lja-miR11139-3p

• Accession: MIMAT0043911
• Description: Lotus japonicus lja-miR11139-3p mature miRNA
• Sequence: 92 - AAGAUGUGUUGACCUGUUAUAGC - 114
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256