miRBase entry: lja-MIR11082m

Stem-loop lja-MIR11082m


Accession
MI0035896
Description
Lotus japonicus lja-MIR11082m precursor miRNA


Sequence

aguuucccgccgauagcuuuuugugugauuucucuacggaAAUCACAGAGAGUUGGUUGGACUagggggucuuguuuuaggccguuugggcugacu
.......((((((.......))).))).....((....))..............((((((.(((((.(((((......))))).))))).))))))

Structure
aguuucccgccgauagcuuuuugugugauuucucuacggaAAUCACAGAGAGUU      A     g     ug 
                                                      GGUUGG CUagg ggucu  u
                                                      |||||| ||||| |||||   
                                                      ucaguc gguuu ccgga  u
------------------------------------------------------      g     g     uu 


Annotation confidence Not enough data
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Genome context
Chr0: 20901417-20901512 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from lja-MIR11082m
Name Accession Chromosome Start End Strand Confidence




Database links

Mature lja-miR11082m-3p

Accession MIMAT0043912
Description Lotus japonicus lja-miR11082m-3p mature miRNA
Sequence 41 - AAUCACAGAGAGUUGGUUGGACU - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256