miRBase entry: lja-MIR11108q

Stem-loop lja-MIR11108q


Accession
MI0035899
Description
Lotus japonicus lja-MIR11108q precursor miRNA


Sequence

uaaaugacucaugaugaaguuuggguuaaauaacucaucauucaaucACAUUGGAGAUAAGUGAGUUGGAguugaaaauaaauuaauaaauaaaauauagaaauuUCAACUCACUUAUCUUAAAUGUGAuuggauuauguguuauuuaacccaaacuuuucuugggucauuua
(((((((((((.((.(((((((((((((((((((.(((.(((((((((((((.((((((((((((((((((((............................)))))))))))))))))))).))))))))))))).))).))))))))))))))))))))).)))))))))))

Structure
           u  u                   u   c             G                    gaaaauaaauuaa 
uaaaugacuca ga gaaguuuggguuaaauaac cau auucaaucACAUU GAGAUAAGUGAGUUGGAguu             u
||||||||||| || ||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||              
auuuacugggu cu uuucaaacccaauuuauug gua uagguuAGUGUAA UUCUAUUCACUCAACUuuaa             a
           u  -                   u   u             A                    agauauaaaauaa 


Annotation confidence Not enough data
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Genome context
Chr4: 35313737-35313909 [-]

Database links

Mature lja-miR11108q-5p

Accession MIMAT0043916
Description Lotus japonicus lja-miR11108q-5p mature miRNA
Sequence 48 - ACAUUGGAGAUAAGUGAGUUGGA - 70
Evidence experimental
Illumina [1]

Mature lja-miR11108q-3p

Accession MIMAT0043917
Description Lotus japonicus lja-miR11108q-3p mature miRNA
Sequence 106 - UCAACUCACUUAUCUUAAAUGUGA - 129
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256