miRBase entry: lja-MIR11145a

Stem-loop lja-MIR11145a


Accession
MI0035906
Description
Lotus japonicus lja-MIR11145a precursor miRNA


Sequence

aggcuuaauagcucuuuuggucccucacuuauuauaauuuugcauuuuugguccccaauaaaaaaacuagcacuuuugguccuccacauugcuuaauuuuuuggaaaaaugaucccuauuucacuauuugggacuaaaauggcaaaaguguguaaauguaagggacuaauuaugcuaauuuuuuucuagagggaccaaaagugcaaaaucguGAUAAGUGAGGGACCAAAAGAGCuauuaagcuu
.((((((((((((((((((((((((((((((((((.((((((((((((((((((((...(((((((.(((((...((((((((..(((((.......((((((.........((((.............)))).........))))))......)))))..))))))))...))))).)))))))...).))))))))))))))))))).)))))))))))))))))))))))))))))))))).

Structure
a                                  a                   - aau       c     cuu        cc     gcuuaau      gaaaaauga    uauuu 
 ggcuuaauagcucuuuuggucccucacuuauuau auuuugcauuuuugguccc c   aaaaaaa uagca   uugguccu  acauu       uuuuug         uccc     c
 |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |   ||||||| |||||   ||||||||  |||||       ||||||         ||||     a
 ucgaauuauCGAGAAAACCAGGGAGUGAAUAGug uaaaacgugaaaaccaggg g   uuuuuuu aucgu   aaucaggg  uguaa       gaaaac         aggg     c
u                                  c                   a auc       a     auu        aa     -augugu      gguaaaauc    uuuau 


Annotation confidence Not enough data
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Genome context
Chr0: 25924671-25924915 [+]

Database links

Mature lja-miR11145a-3p

Accession MIMAT0043926
Description Lotus japonicus lja-miR11145a-3p mature miRNA
Sequence 213 - GAUAAGUGAGGGACCAAAAGAGC - 235
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256