Stem-loop lja-MIR11145b

Accession

MI0035907

Description

Lotus japonicus lja-MIR11145b precursor miRNA

Sequence

ggcuuaauagcucuuuugaucccucacuuauaacaauuuugcauuuuuugucccuuuagaaaaaaauuagcaaaauuagucccucacauuuacacacuuuugcaguuuuagucuaaauagggaucauuuuuacaaauaaauaagcaauguggaggacuaaaagugcuaauuuuuuuauuggggaccaaaaguuaaaaacuauGAUAAGUGAGGGACCAAAAGAGCuauuaagcc
((((((((((((((((((.((((((((((((.....(((((.((((((.((((((....(((((((((((((...(((((((.(((((((........((((........((((......))))........)))).........))))))).)))))))...)))))))))))))...)))))).)))))))))))......)))))))))))).))))))))))))))))))

Structure

                  a            -aacaa     c      u      uuag             aaa       c       -uacacacu    caguuuua    aa 
ggcuuaauagcucuuuug ucccucacuuau      uuuug auuuuu gucccu    aaaaaaauuagca   uuagucc ucacauu         uuug        gucu  a
|||||||||||||||||| ||||||||||||      ||||| |||||| ||||||    |||||||||||||   ||||||| |||||||         ||||        ||||   
ccgaauuauCGAGAAAAC AGGGAGUGAAUA      aaaau ugaaaa cagggg    uuuuuuuaaucgu   aaucagg gguguaa         aaac        uagg  u
                  C            Guauca     -      c      -uua             gaa       a       cgaauaaau    auuuuuac    ga 

Annotation confidence Not enough data

Genome context

Chr1: 33615847-33616080 [+]

Mature lja-miR11145b-3p

• Accession: MIMAT0043927
• Description: Lotus japonicus lja-miR11145b-3p mature miRNA
• Sequence: 203 - GAUAAGUGAGGGACCAAAAGAGC - 225
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25967282
   micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
   "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
   "New Phytol (2015) 208:241-256