miRBase entry: lja-MIR11145c

Stem-loop lja-MIR11145c


Accession
MI0035908
Description
Lotus japonicus lja-MIR11145c precursor miRNA


Sequence

aauagcuuuuuuggucccucacuuaucacgguuuugcacuuuugaucccuaauaaaaaaauuagcacuuuugguccuccacauugcuuauuuauuugcaaaaaugaucccuauuuagacuaaaacugcaaaaguguguaaaugugagggacuaauuuugcuaauuuuuuucuaaagagaccaaaagagcaaaauuguGAUAAGUGAGGGACCAAAAGAGCuauu
(((((((((((((((((((((((((((((((((((((.((((((.((.((...(((((((((((((...((((((((.((((((((.(((((..(((((.......((........)).......)))))))))).)).)))))).))))))))...)))))))))))))....)).)).)))))).)))))))))))))))))))))))))))))))))))))

Structure
                                     a      a  c  -aau             cuu        c      -  u     au     aaaauga  ccu 
aauagcuuuuuuggucccucacuuaucacgguuuugc cuuuug uc cu    aaaaaaauuagca   uugguccu cacauu gc uauuu  uugca       uc   a
||||||||||||||||||||||||||||||||||||| |||||| || ||    |||||||||||||   |||||||| |||||| || |||||  |||||       ||    
uuauCGAGAAAACCAGGGAGUGAAUAGuguuaaaacg gaaaac ag ga    uuuuuuuaaucgu   aaucaggg guguaa ug gugaa  aacgu       ag   u
                                     a      c  a  aauc             uuu        a      a  u     --     caaaauc  auu 


Annotation confidence Not enough data
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Genome context
Chr3: 38745538-38745761 [+]

Database links

Mature lja-miR11145c-3p

Accession MIMAT0043928
Description Lotus japonicus lja-miR11145c-3p mature miRNA
Sequence 198 - GAUAAGUGAGGGACCAAAAGAGC - 220
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25967282
    micro RNA 172 (miR172) signals epidermal infection and is expressed in cells primed for bacterial invasion in Lotus japonicus roots and nodules
    "Holt DB, Gupta V, Meyer D, Abel NB, Andersen SU, Stougaard J, Markmann K"
    "New Phytol (2015) 208:241-256